Package: ss3sim 1.21.0
ss3sim: Fisheries Stock Assessment Simulation Testing with Stock Synthesis
A framework for fisheries stock assessment simulation testing with Stock Synthesis (SS3) as described in Anderson et al. (2014) <doi:10.1371/journal.pone.0092725>.
Authors:
ss3sim_1.21.0.tar.gz
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ss3sim.pdf |ss3sim.html✨
ss3sim/json (API)
NEWS
# Install 'ss3sim' in R: |
install.packages('ss3sim', repos = c('https://ss3sim.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ss3sim/ss3sim/issues
- codemctl - Control file for the cod estimation method
- codomctl - Control file for the cod operating model
- codomdat - Data for the cod operating model
- scalar_dat - Example scalar data from the Introduction vignette
- ts_dat - Example time-series data from the Introduction vignette
fisheriessimulationstock-synthesis
Last updated 12 days agofrom:54a41f5b85. Checks:OK: 1 ERROR: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 25 2024 |
R-4.5-win | ERROR | Oct 25 2024 |
R-4.5-linux | ERROR | Oct 25 2024 |
R-4.4-win | ERROR | Oct 25 2024 |
R-4.4-mac | ERROR | Oct 25 2024 |
R-4.3-win | ERROR | Oct 25 2024 |
R-4.3-mac | ERROR | Oct 25 2024 |
Exports:%>%calculate_data_unitscalculate_rechange_dat_binchange_datachange_echange_em_binningchange_fchange_ochange_qchange_rec_devschange_retrochange_tail_compressionchange_tvcheck_datacheck_qconvert_to_widecopy_ss3modelscreate_emfill_acrossfind_positionget_binget_model_folderget_recdevsget_results_allget_results_derivedget_results_iterget_results_modget_results_scalarget_results_scenarioget_results_timeseriesget_scenariosget_sigmarplot_boxplotplot_cummeanplot_linesplot_pointsprofile_fmsyrun_ss3simsample_agecompsample_calcompsample_catchsample_discardsample_indexsample_lcompsample_mlacompsample_wtatagesetup_binssetup_scenariossetup_scenarios_defaultssetup_scenarios_fleetss3sim_baseverify_input
Dependencies:askpassbase64encbslibcachemclicodacodetoolscolorspacecorpcorcpp11curldigestdplyrevaluatefansifarverfastmapfontawesomeforcatsforeachfsfurrrfuturegenericsggplot2ghgitcredsglobalsgluegridExtragtablegtoolshighrhtmltoolshttr2iniisobanditeratorsjquerylibjsonlitekableExtraknitrlabelinglatticelifecyclelistenvmagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslparallellypillarpkgconfigpurrrr4ssR6rappdirsRColorBrewerrlangrmarkdownrstudioapisassscalesstringistringrsvglitesyssystemfontstibbletidyrtidyselecttinytexutf8vctrsviridisviridisLitewithrxfunxml2yaml
Creating new ss3sim model setups
Rendered frommaking-models.Rmd
usingknitr::rmarkdown
on Oct 25 2024.Last update: 2022-07-29
Started: 2015-01-26
Introduction to ss3sim
Rendered fromintroduction.Rmd
usingknitr::rmarkdown
on Oct 25 2024.Last update: 2024-03-05
Started: 2015-01-26
Modifying the model included with ss3sim
Rendered frommodifying-models.Rmd
usingknitr::rmarkdown
on Oct 25 2024.Last update: 2022-05-26
Started: 2015-01-26